Publications - Piet C . de Groen, M.D.

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1. Coden A, Savova G, Sominsky I, Tanenblatt M, Masanz J, Schuler K, Cooper J, Guan W, de Groen PC. Automatically extracting cancer disease characteristics from pathology reports into a disease knowledge representation model. J Biomed Inform 2009 Oct; 42(5 Special Issue SI):937-49.
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2. Oh J, Hwang S, Cao Y, Tavanapong W, Liu DY, Wong J, de Groen PC. Measuring objective quality of colonoscopy. IEEE Trans Biomed Eng 2009 Sep; 56(9 Part 1):2190-6.
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3. Savova GK, Coden AR, Sominsky IL, Johnson R, Ogren PV, de Groen PC, Chute CG. Word sense disambiguation across two domains: biomedical literature and clinical notes. J Biomed Inform 2008 Dec; 41(6):1088-100. Epub 2008 Mar 04.
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4. Murad SD, Dom VAL, Ritman EL, de Groen PC, Beigley PE, Abraham SC, Zondervan PE, Janssen HLA. Early changes of the portal tract on microcomputed tomography images in a newly-developed rat model for Budd-Chiari syndrome. J Gastroenterol Hepatol 2008 Oct; 23(10):1561-6.
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5. Zhang M, Wong J, Tavanapong W, Oh J, de Groen P. Deadline-constrained media uploading systems. Multimedia Tools & Applications 2008 May; 38(1):51-74.
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6. Liu D, Cao Y, Kim KH, Stanek S, Doungratanaex-Chai B, Lin K, Tavanapong W, Wong J, Oh J, de Groen PC. Arthemis: annotation software in an integrated capturing and analysis system for colonoscopy. Comput Methods Programs Biomed 2007 Nov; 88(2):152-63. Epub 2007 Sep 12.
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7. Degnim AC, Visscher DW, Berman HK, Frost MH, Sellers TA, Vierkant RA, Maloney SD, Pankratz VS, de Groen PC, Lingle WL, Ghosh K, Penheiter L, Tlsty T, Melton LJ 3rd, Reynolds CA, Hartmann LC. Stratification of breast cancer risk in women with atypia: a Mayo cohort study. J Clin Oncol 2007 Jul 1; 25(19):2671-7. Epub 2007 Jun 11.
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8. Cao Y, Liu D, Tavanapong W, Wong J, Oh J, de Groen PC. Computer-aided detection of diagnostic and therapeutic operations in colonoscopy videos. IEEE Trans Biomed Eng 2007 Jul; 54(7):1268-79.
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9. Murad SD, Kim WR, de Groen PC, Kamath PS, Malinchoc M, Valla DC, Janssen HL. Can the model for end-stage liver disease be used to predict the prognosis in patients with Budd-Chiari syndrome? Liver Transpl 2007 Jun; 13(6):867-74.
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10. Oh J, Hwang S, Lee J, Tavanapong W, Wong J, de Groen PC. Informative frame classification for endoscopy video. Med Image Anal 2007 Apr; 11(2):110-27.
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11. Leerapun A, Suravarapu SV, Bida JP, Clark RJ, Sanders EL, Mettler TA, Stadheim LM, Aderca I, Moser CD, Nagorney DM, LaRusso NF, de Groen PC, Menon KV, Lazaridis KN, Gores GJ, Charlton MR, Roberts RO, Therneau TM, Katzmann JA, Roberts LR. The utility of Lens culinaris agglutinin-reactive alpha-fetoprotein in the diagnosis of hepatocellular carcinoma: evaluation in a United States referral population. Clin Gastroenterol Hepatol 2007 Mar; 5(3):394-402; quiz 267.
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12. Darwish Murad S, Valla DC, de Groen PC, Zeitoun G, Haagsma EB, Kuipers EJ, Janssen HL. Pathogenesis and treatment of Budd-Chiari syndrome combined with portal vein thrombosis. Am J Gastroenterol 2006 Jan; 101(1):83-90.
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13. Murad SD, Valla DC, de Groen PC, Zeitoun G, Haagsma EB, Kuipers EJ, Janssen HLA. Pathogenesis and treatment of Budd-Chiari syndrome combined with portal vein thrombosis. Am J Gastroenterol 2006 Jan; 101(1):83-90.
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14. de Groen PC, Tavanapong W, Oh J, Wong J. Manual annotation of colonoscopy videos: a first step towards automation. AMIA Annu Symp Proc 2006; 901.
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15. Harewood GC, Baron TH, Rumalla A, Wang KK, Gores GJ, Stadheim LM, de Groen PC. Pilot study to assess patient outcomes following endoscopic application of photodynamic therapy for advanced cholangiocarcinoma. J Gastroenterol Hepatoll 2005 Mar; 20(3):415-20.
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16. Jovanov E, Milenkovic A, Otto C, de Groen PC. A wireless body area network of intelligent motion sensors for computer-assisted physical rehabilitation. Journal of NeuroEngineering and Rehabilitation 2005; 2:6.
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17. Kipp BR, Stadheim LM, Halling SA, Pochron NL, Harmsen S, Nagorney DM, Sebo TJ, Therneau TM, Gores GJ, de Groen PC, Baron TH, Levy MJ, Halling KC, Roberts LR. A comparison of routine cytology and fluorescence in situ hybridization for the detection of malignant bile duct strictures. Am J Gastroenterol 2004 Sep; 99(9):1675-81.
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18. Baker DJ, Jeganathan KB, Cameron JD, Thompson M, Juneja S, Kopecka A, Kumar R, Jenkins RB, de Groen PC, Roche P, van Deursen JM. BubR1 insufficiency causes early onset of aging-associated phenotypes and infertility in mice. Nat Genet 2004 Jul; 36(7):744-9.
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19. Baron TH, Harewood GC, Rumalla A, Pochron NL, Stadheim LM, Gores GJ, Therneau TM, de Groen PC, Sebo TJ, Salomao DR, Kipp BR. A prospective comparison of digital image analysis and routine cytology for the identification of malignancy in biliary tract strictures. Clinical Gastroenterology & Hepatology 2004 Mar; 2(3):214-9.
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20. Murad SD, Valla DC, de Groen PC, Zeitoun G, Hopmans JAM, Haagsma EB, van Hoek B, Hansen BE, Rosendaal FR, Janssen HLA. Determinants of survival and the effect of portosystemic shunting in patients with Budd-Chiari syndrome. Hepatology 2004 Feb; 39(2):500-8.
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21. Martin-Sanchez F, Iakovidis I, Norager S, Maojo V, de Groen P, Van der Lei J, Jones T, Abraham-Fuchs K, Apweiler R, Babic R, Baud R, Breton V, Cinquin P, Doupi P, Dugas M, Eils R, Engelbrecht R, Ghazal P, Jehenson P, Kulikowski C, Lampe K, De Moor G, Orph Synergy between medical informatics and bioinformatics: Facilitating genomic medicine for future health care. Journal of Biomedical Informatics 2004; 37:30-42.
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22. Zhang M, Wong J, Tavanapong W, Oh J, de Groen PC. Media uploading systems with hard deadlines. Proceedings of IASTED International Conference on Internet and Multimedia Systems and Applications 2004:305-10.
23. Cao Y, Tavanapong W, Li D, Oh JH, de Groen PC, Wong J. A visual model approach for parsing colonoscopy videos. Proceedings of the International Conf on Image and Video Retrieval 2004:21-3.
24. Cao Y, Li D, Tavanapong W, Wong J, Oh J, de Groen PC. Parsing and browsing tools for colonoscopy videos. Proceedings of ACM Multimedia 2004:844-51.
25. Oh JH, Hwang S, Tavanapong W, de Groen PC, Wong J. Burry frame detection and shot segmentation in colonoscopy videos. IS&T/SPIE Storage and Retrieval Methods and Applications for Multimedia 2004; 4 pp 531-42.
26. Cao Y, Tavanapong W, Kim K, Wong J, Oh J, de Groen PC. A framework for parsing colonoscopy videos for semantic units. Proceedings of IEEE ICME pp 216-8 2004.
27. Laird SP, Wong JSK, Schaller WJ, Erickson BJ, de Groen PC. Design and implementation of an Internet-based medical image viewing system. Journal of Systems & Software 2003 May 15; 66(2):167-81.
28. Harewood GC, Wiersema MJ, de Groen PC. Utility of web-based assessment of patient satisfaction with endoscopy. Am J Gastroenterol 2003 May; 98(5):1016-21.
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29. Petersen WO, Trapp MA, Vierkant RA, Sellers TA, Kottke TE, de Groen PC, Nicometo AM, Kaur JS. Outcomes of training nurses to conduct breast and cervical cancer screening of Native American women. Holist Nurs Pract 2002 Jan; 16(2):58-79.
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30. Keller D, Schaller WJ, Wong JSK, de Groen PC. World-Wide Web-based graphical user interfaces for laboratory data. Methods Inf Med 2002; 41(5):411-3.
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31. Tang TJ, Batts KP, de Groen PC, van Hoek B, Haagsma EB, Hop WCJ, Janssen HLA. The prognostic value of histology in the assessment of patients with Budd-Chiari syndrome. J Hepatol 2001 Sep; 35(3):338-343.
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32. Wang X, Babu JR, Harden JM, Jablonski SA, Gazi MH, Lingle WL, de Groen PC, Yen TJ, van Deursen JM. The mitotic checkpoint protein hBUB3 and the mRNA export factor hRAE1 interact with GLE2p-binding sequence (GLEBS)-containing proteins. J Biol Chem 2001 Jul 13; 276(28):26559-67.
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33. Rumalla A, Baron TH, Wang KK, Gores GJ, Stadheim LM, de Groen PC. Endoscopic application of photodynamic therapy for cholangiocarcinoma. Gastrointest Endosc 2001 Apr; 53(4):500-4.
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34. Kaya M, de Groen PC, Angulo P, Nagorney DM, Gunderson LL, Gores GJ, Haddock MG, Lindor KD. Treatment of cholangiocarcinoma complicating primary sclerosing cholangitis: the Mayo Clinic experience. Am J Gastroenterol 2001 Apr; 96(4):1164-9.
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35. Rumalla A, Baron TH, Leontovich O, Burgart LJ, Yacavone RF, Therneau TM, de Groen PC, Sebo TJ. Improved diagnostic yield of endoscopic biliary brush cytology by digital image analysis. Mayo Clin Proc 2001 Jan; 76(1):29-33.
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36. de Groen PC, Gores GJ, LaRusso NF, Gunderson LL, Nagorney DM. Medical progress - biliary tract cancers. N Engl J Med 1999 Oct 28; 341(18):1368-1378.
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37. O'Sullivan DA, Torres VE, de Groen PC, Batts KP, King BF, Vockley J. Hepatic lymphangiomatosis mimicking polycystic liver disease. Mayo Clin Proc 1998 Dec; 73(12):1188-92.
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38. Tietz P, de Groen PC, Anderson NL, Sims C, Esquer-Blasco R, Meheus L, Raymackers J, Dauwe M, LaRusso NF. Cholangiocyte-specific rat liver proteins identified by establishment of a two-dimensional gel protein database. Electrophoresis 1998 Dec; 19(18):3207-12.
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39. de Groen PC, Vroman B, Laakso K, LaRusso NF. Characterization and growth regulation of a rat intrahepatic bile duct epithelial cell line under hormonally defined, serum-free conditions. In Vitro Cell Dev Biol Anim 1998 Oct; 34(9):704-10.
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40. de Groen PC, Barry JA, Schaller WJ. Applying World Wide Web technology to the study of patients with rare diseases. Ann Intern Med 1998 Jul 15; 129(2):107-13.
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41. Lazaridis KN, Pham L, Tietz P, Marinelli RA, deGroen PC, Levine S, Dawson PA, LaRusso NF. Rat cholangiocytes absorb bile acids at their apical domain via the ileal sodium-dependent bile acid transporter. J Clin Invest 1997 Dec 1; 100(11):2714-21.
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42. Lazaridis KN, Pham L, Vroman B, de Groen PC, LaRusso NF. Kinetic and molecular identification of sodium-dependent glucose transporter in normal rat cholangiocytes. Am J Physiol 1997 May; 272(5 Pt 1):G1168-74.
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43. Tsiotos GG, Nagorney DM, de Groen PC. Selective management of hepatic venous outflow obstruction. J Gastrointest Surg 1997; 1(4):377-85.
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44. de Groen PC, Lubbe DF, Hirsch LJ, Daifotis A, Stephenson W, Freedholm D, Pryor-Tillotson S, Seleznick MJ, Pinkas H, Wang KK. Esophagitis associated with the use of alendronate. N Engl J Med 1996 Oct 3; 335(14):1016-21.
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45. Boeve BF, Kimmel DW, Aronson AE, de Groen PC. Dysarthria and apraxia of speech associated with FK-506 (tacrolimus). Mayo Clin Proc 1996 Oct; 71(10):969-72.
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46. Carter DK, Batts KP, de Groen PC, Kurtin PJ. Angiotropic large cell lymphoma (intravascular lymphomatosis) occurring after follicular small cleaved cell lymphoma. Mayo Clin Proc 1996 Sep; 71(9):869-73.
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47. Badley AD, Portela DF, Patel R, Kyle RA, Habermann TM, Strickler JG, Ilstrup DM, Wiesner RH, de Groen P, Walker RC, Paya CV. Development of monoclonal gammopathy precedes the development of Epstein-Barr virus-induced posttransplant lymphoproliferative disorder. Liver Transpl Surg 1996 Sep; 2(5):375-82.
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48. Arora AS, de Groen PC, Croall DE, Emori Y, Gores GJ. Hepatocellular carcinoma cells resist necrosis during anoxia by preventing phospholipase-mediated calpain activation. J Cell Physiol 1996 Jun; 167(3):434-42.
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49. Yano M, Marinelli RA, Roberts SK, Balan V, Pham L, Tarara JE, de Groen PC, LaRusso NF. Rat hepatocytes transport water mainly via a non-channel-mediated pathway. J Biol Chem 1996 Mar 22; 271(12):6702-7.
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50. Arora AS, de Groen P, Emori Y, Gores GJ. A cascade of degradative hydrolase activity contributes to hepatocyte necrosis during anoxia. Am J Physiol Gastrointest Liver Physiol 1996 Feb; 270(2):G 238-45.
51. Aksamit AJ Jr, de Groen PC. Cyclosporine-related leukoencephalopathy and PML in a liver transplant recipient. Transplantation 1995 Oct 27; 60(8):874-6.
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52. Nakano A, Marks DL, Tietz PS, de Groen PC, LaRusso NF. Quantitative importance of biliary excretion to the turnover of hepatic lysosomal enzymes. Hepatology 1995 Jul; 22(1):262-6.
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53. Wijdicks EF, de Groen PC, Wiesner RH, Krom RA. Intracerebral hemorrhage in liver transplant recipients. Mayo Clin Proc 1995 May; 70(5):443-6.
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54. de Groen PC, Eggen BJ, Gispen WH, Schotman P, Schrama LH. Cloning and promoter analysis of the human B-50/GAP-43 gene. J Mol Neurosci 1995; 6(2):109-19.
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55. de Groen PC, Kephart GM, Gleich GJ, Ludwig J. The eosinophil as an effector cell of the immune response during hepatic allograft rejection. Hepatology 1994 Sep; 20(3):654-62.
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56. Yale SH, de Groen PC, Tooson JD, Kurtin PJ. Unusual aspects of acute Q fever-associated hepatitis. Mayo Clin Proc 1994 Aug; 69(8):769-73.
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57. Windebank AJ, Blexrud MD, de Groen PC. Potential neurotoxicity of the solvent vehicle for cyclosporine. Journal of Pharmacology & Experimental Therapeutics 1994 Feb; 268(2):1051-6.
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58. Nielander HB, De Groen PC, Eggen BJ, Schrama LH, Gispen WH, Schotman P. Structure of the human gene for the neural phosphoprotein B-50 (GAP-43). Brain Res Mol Brain Res 1993 Sep; 19(4):293-302.
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59. Schlinkert RT, de la Garza-Grahm M, Reeder CB, Weiland LH, Beart RW Jr, Gleich GJ, Kephart GM, de Groen PC. Eosinophil-mediated bile duct stricture. Arch Pathol Lab Med 1992 Nov; 116:1241-3.
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60. Wszolek ZK, Aksamit AJ, Ellingson RJ, Sharbrough FW, Westmoreland BF, Pfeiffer RF, Steg RE, de Groen PC. Epileptiform electroencephalographic abnormalities in liver transplant recipients. Ann Neurol 1991 Jul; 30(1):37-41.
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61. de Groen PC. Cyclosporine and the liver: how one affects the other. Transplant Proc 1990 Jun; 22(3):1197-202.
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62. de Groen PC, LeSage GD, Tietz PS, LaRusso NF. Purification and immunological quantification of rat liver lysosomal glycosidases. Biochem J 1989 Nov 15; 264(1):115-23.
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63. de Groen PC. Cyclosporine: a review and its specific use in liver transplantation. Mayo Clin Proc 1989 Jun; 64(6):680-9.
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64. de Groen PC, Wiesner RH, Krom RA. Advanced liver failure predisposes to cyclosporine-induced central nervous system symptoms after liver transplantation. Transplant Proc 1989 Feb; 21(1 Pt 2):2456.
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65. de Groen PC. Chronische intoxicatie door salicylzuur verbindingen: vaak niet herkend of verkeerd hehandeld. Ned Tijdschr Geneeskd 1989; 133:1481-5.
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66. de Groen PC, Aksamit AJ, Westmoreland BF, Kottke BA, Krom RAF. Low cholesterol levels and intracranial hemorrhages after liver transplantation. New England J Med 1989; 321:1340-1.
67. Wilson SE, de Groen PC, Aksamit AJ, Wiesner RH, Garrity JA, Krom RA. Cyclosporin A-induced reversible cortical blindness. J Clin Neuroophthalmol 1988 Dec; 8(4):215-20.
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68. de Groen PC. Cyclosporine, low-density lipoprotein, and cholesterol. Mayo Clin Proc 1988 Oct; 63(10):1012-21.
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69. de Groen PC, Wiesner RH, Krom RA. Cyclosporine A-induced side effects related to a low total serum cholesterol level: an indication for a free cyclosporine A assay? Transplant Proc 1988 Apr; 20(2 Suppl 2):374-6.
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70. de Groen PC, McCallum DK, Moyer TP, Wiesner RH. Pharmacokinetics of cyclosporine in patients with primary biliary cirrhosis. Transplant Proc 1988 Apr; 20(2 Suppl 2):509-11.
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71. de Groen PC, Aksamit AJ, Rakela J, Forbes GS, Krom RAF. The role of cyclosporine A and cholesterol in a new central nervous system syndrome after liver transplantation. Transplant Proc 1988 Feb; 20(Suppl 1):625-7.
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72. de Groen PC. Hypothesis. Cyclosporine, low-density lipoprotein, and cholesterol. Mayo Clin Proc 1988; 63:1012-21.
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73. de Groen PC, Aksamit AJ, Rakela J, Forbes GS, Krom RA. Central nervous system toxicity after liver transplantation. The role of cyclosporine and cholesterol. N Engl J Med 1987 Oct 1; 317(14):861-6.
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74. de Groen PC, Rakela J, Moore SC, McGill DB, Burton DD, Ott BJ, Zinsmeister AR. Diagnostic laparoscopy in gastroenterology. A 14-year experience. Dig Dis Sci 1987 Jul; 32(7):677-81.
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