Publications - Peter W. Li, Ph.D.

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1. Kolbert CP, Feddersen RM, Rakhshan F, Grill DE, Simon G, Middha S, Jang JS, Simon V, Schultz DA, Zschunke M, Lingle W, Carr JM, Thompson EA, Oberg AL, Eckloff BW, Wieben ED, Li P, Yang P, Jen J. Multi-platform analysis of microRNA expression measurements in RNA from fresh frozen and FFPE tissues. PLoS One. 2013; 8(1):e52517. Epub 2013 Jan 31.
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2. Oberg AL, Kennedy RB, Li P, Ovsyannikova IG, Poland GA. Systems biology approaches to new vaccine development. Curr Opin Immunol. 2011 Jun; 23(3):436-43. Epub 2011 May 11.
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3. Simon GJ, Li PW, Jack CR Jr, Vemuri P. Understanding atrophy trajectories in Alzheimer's disease using association rules on MRI images. Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. 2011:369-76.
4. Simon GJ, Kumar V, Li PW. A simple statistical model and association rule filtering for classification. Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. 2011; 823-31.
5. Hellmann I, Mang Y, Gu Z, Li P, de la Vega FM, Clark AG, Nielsen R. Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals. Genome Res. 2008 Jul; 18(7):1020-9. Epub 2008 Apr 14.
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6. Brzoska PM, Brown C, Cassel M, Ceccardi T, Di Francisco V, Dubman A, Evans J, Fang R, Harris M, Hoover J, Hu F, Larry C, Li P, Malicdem M, Maltchenko S, Shannon M, Perkins S, Poulter K, Webster-Laig M, Xiao C, Young S, Spier G, Guegler K, Gilbert D, An efficient and high-throughput approach for experimental validation of novel human gene predictions. Genomics. 2006 Apr; 87(4):437-45. Epub 2006 Jan 09.
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7. Yao A, Charlab R, Li P. Systematic identification of pseudogenes through whole genome expression evidence profiling. Nucleic Acids Res. 2006; 34(16):4477-85. Epub 2006 Aug 31.
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8. Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P, Sutton G. Gene and alternative splicing annotation with AIR. Genome Res. 2005 Jan; 15(1):54-66.
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9. Scherer SW, Cheung J, Venter JC, Li PW, Mural RJ, Adams MD, Tsui LC. Human chromosome 7: DNA sequence and biology. Science. 2003 May 2; 300(5620):767-72.
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10. Li P. Biological Data Extinction. OMICS. 2003 Spr; 7(1):49-50.
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11. Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, Myers EW, Li PW, Eichler EE. Recent segmental duplications in the human genome. Science. 2002 Aug 9; 297(5583):1003-7.
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12. Mural RJ, Adams MD, Myers EW, Smith HO, Miklos GL, Wides R, Halpern A, Li PW, et al. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science. 2002 May 31; 296(5573):1661-71.
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13. Kerlavage A, Bonazzi V, di Tommaso M, Lawrence C, Li P, Mayberry F, Mural R, Nodell M, Yandell M, Zhang J, Thomas P. The Celera Discovery System. Nucleic Acids Res. 2002 Jan 1; 30(1):129-36.
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14. Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos The sequence of the human genome. Science. 2001 Feb 16; 291(5507):1304-51.
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15. Rubin GM, Yandell MD, Wortman JR, Gabor Miklos GL, Nelson CR, Hariharan IK, Fortini ME, Li PW, Apweiler R, Fleischmann W, Cherry JM, Henikoff S, Skupski MP, Misra S, Ashburner M, Birney E, Boguski MS, Brody T, Brokstein P, Celniker SE, Chervitz SA, Coates Comparative genomics of the eukaryotes. Science. 2000 Mar 24; 287(5461):2204-15.
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16. Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer, SE, Li PW, et al. The Genome Sequence of Drosophila melanogaster. Science. 2000 Mar 24; 287(5461):2185-95.
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17. Letovsky S, Cottingham R, Porter C, Li P. GDB: the Human Genome Database. Nucleic Acid Research. 1998; 26(1):94-9.
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18. Fasman KH, Letovsky SI, Li P, Cottingham RW, Kingsbury DT. The GDB Human Genome Database Anno 1997. Nucleic Acids Res 1 1997 Jan 1; 25(1):72-81.
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19. Li P, Waldo D, Pineo S, Foster P. An efficient delivery historical information for the mendelian inheritance in Man Database. JAMIA Symposium Supplement:1995 SCAMC Proceedings. New Orleans,LA, 1995 Nov:127-31.
20. Li P, Fasman K. Toolkit technology for database federation. 1995 Annual Meeting of CODATA Task Group on Biological Macromolecules. George Mason University, Fairfax, Virginia, 1995 Jun.
21. Li P, Kramer L, Pineo S, Kulp D. Evolving a legacy system: restructuring the mendelian inheritance in Man Database. JAMIA Symposium Supplement: SCAMC Proceedings. Washington, DC. 1994 Nov:344-8.
22. Pearson P, Francomano C, Foster P, Bocchini C, Li P, McKusick V. The status of online Mendelian inheritance in man (OMIM) medio 1994. Nucleic Acids Res. 1994 Sep; 22(17):3470-3.
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